
    GdN              	       H   d Z ddlmZ ddlZddlmZ  ej        d          Z	 e
 ee	          dz            Z e ee	j                  e          Ze	                    e           d e	                                D             Ze	                    e            ej        e	          Z eee          Ze	                    e          Z ej        edd	
          Zej                            e          Zd  ee          D             Z ej        d          \  Z Z! ej"        edd          Z#d eD             Z$d e%                                D             Z& ej'        ee#de$e&dd           ddddZ(e!)                    de(           de(d<   e!*                    ddd d!e!j+        e("           e!*                    dd#d$d!e!j+        e("           e!,                    dd%           e -                                  ej.        d&            ej/                     dS )'z
======================
Betweenness Centrality
======================

Betweenness centrality measures of positive gene functional associations
using WormNet v.3-GS.

Data from: https://www.inetbio.org/wormnet/downloadnetwork.php
    )sampleNzWormNet.v3.benchmark.txtg      ?c                 $    g | ]\  }}|d k     |S )
    ).0nds      Ishare/doc/networkx-3.1/examples/algorithms/plot_betweenness_centrality.py
<listcomp>r      s!    111DAq!b&&a&&&    )keyr   T)k	endpointsc                 $    i | ]\  }}|D ]}||S r   r   )r   icomr   s       r
   
<dictcomp>r   '   s+    BBBFAscBB1aBBBBr   )      )figsizeg333333?iE )r   seedc                 (    g | ]}t           |         S r   )community_index)r   r   s     r
   r   r   ,   s    ,,,Qoa ,,,r   c                     g | ]}|d z  S )i N  r   )r   vs     r
   r   r   -   s    4441QY444r   F	gainsborog?)poswith_labels
node_color	node_size
edge_coloralphar   boldr   )color
fontweightfontsizez0Gene functional association network (C. elegans)rr$   g?g?z node color = community structurecenter)horizontalalignment	transformfontdictgQ?z"node size = betweenness centralityg?off)0__doc__randomr   networkxnxmatplotlib.pyplotpyplotpltread_edgelistGintlennum_to_removelistnodesremove_nodes_fromdegree
low_degreeconnected_components
componentsmaxlargest_componentsubgraphHbetweenness_centrality
centrality	communitylabel_propagation_communitieslpc	enumerater   subplotsfigaxspring_layoutr   r   valuesr    draw_networkxfont	set_titletext	transAxesmarginstight_layoutaxisshowr   r   r
   <module>rX      s  	 	                 B/00 CCFFSL!!ttAG}}m,,   E    21AHHJJ111
   J    %R$Q''
C
,,, JJ !! 'R&qB$???
 	l0033BBiinnBBB #,x
(
(
(RbqDw///,,!,,,
44
 1 1 3 3444	  
    F;; ? F F FW & l     ( l     

3           




r   